Abdurrahim Yilmaz

Abdurrahim Yilmaz

Research Assistant

Bundeswehr University Munich

Biography

I am a Research Assistant at Bundeswehr University Munich. I am working on computer vision and deep generative networks for single cell analysis.

I obtained my Master and Bachelor degree in Mechatronics Engineering from Yildiz Techinal University (YTU) under supervision of Prof. Huseyin Uvet. For 6 years, I am member of Advanced System and Innovation Laboratories in YTU as Student Assistant (2017-2020), Research Assistant (2020-2022) and now Engineering Manager (2022-now). Also, I was the Research Engineer at ASELSAN for 6 months in 2020.

Download my resumé .

Interests
  • Microrobotics
  • Computer Vision
  • Deep Learning
Education
  • MSc in Mechatronics Engineering, 2022

    Yildiz Technical University

  • BSc in Mechatronics Engineering, 2020

    Yildiz Technical University

Projects

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Virtual Sport Coach (Budget:50k USD)
I manage a body tracking project with quantitative analysis to improve success of professional players and to prevent injuries.
Virtual Sport Coach (Budget:50k USD)
Cell Stiffness Measurement with Acousto-Holographic Microscope
I built a digital holographic microscope from scratch based on Mach-Zehnder interferometry. I did more than 100 experiments using this microscope.
Cell Stiffness Measurement with Acousto-Holographic Microscope
Microrobotic Setup GUI and Image-Based Control (Best Paper Award)
I developed a closed loop image-based control approach for microrobots. In final stage, I decreased calculations by %80 from 120ms to 20ms, and I implemented in real time. Also, with my colleague, we developed a complete graphical user interface for a microrobotic setup that includes laser sensors, servo motors, linear motors, and scientific cameras.
Laser Scanning Microscope
We developed a 3D laser scanning microscope from scratch by using a laser sensor with 49kHz measuring rate at nanometer resolution.
Laser Scanning Microscope
Flapping Wing UAV (Ornithopter)
I developed wireless communication of UAV using ESP8266 and NodemCU.
Flapping Wing UAV (Ornithopter)
Incubator Compatible Holographic Imaging System (Bachelor Thesis)
I developed an end2end 3D reconstruction algorithms for holograms. With my two collegaues, we demonstrated a small size digital holographic microscope.
Incubator Compatible Holographic Imaging System (Bachelor Thesis)
IoT Projects
I developed an IoT system for smart homes using MQTT Protocol and NodemCU.
Lab Immersion Projects
I completed 5 computer vision tasks using C# with GUI such as simple object detection, car plate recognition with optical character recognition, real time virtual calculator.
Microrobotic Mixer
I developed a microrobotic mixer with experimental setup using a microfluidic chip for nanoparticle mixing.
Microrobotic Mixer
Microrobotic Platform for Wound Scratching
We developed a microfluidic wound scratching platform using untethered microrobots.
Microrobotic Platform for Wound Scratching
Thermal Imprint Apparatus
I designed a induction heating system with on/off and PID control for a nano imprint apparatus. I chose and integrated all electrical equipments such as power supply, induction coil.

Experience

 
 
 
 
 
Bundeswehr University Munich
Research Assistant
Bundeswehr University Munich
Aug 2022 – Present Munich, Germany
  • Software Engineering
  • Developing deep generative networks.
  • Single cell image analysis.
 
 
 
 
 
Advanced Systems and Innovation Laboratories
Engineering Manager
Advanced Systems and Innovation Laboratories
Jun 2022 – Present Istanbul, Turkey
  • Leading the artificial intelligence projects in sports and medicine.
  • Project writing and developing an AI-assisted virtual sport coach. Supported by The Scientific and Technological Research Council Of Turkey (TUBITAK) - 1001 - 121E683
  • Project Budget: 768.000 TL (appx: 52.000 USD)
 
 
 
 
 
Yildiz Technical University
Research Assistant
Yildiz Technical University
Jun 2020 – Jul 2022 Istanbul, Turkey
  • TUBITAK 1003 (Project no: 116E743): Measuring the mechanical cell stiffness of circulating tumor cells using acoustic signals and digital holography.
  • Biomedical imaging with deep learning applications.
  • Microrobotic wound scratching platform (Master Thesis).
 
 
 
 
 
ASELSAN
Research Engineer
ASELSAN
Dec 2019 – Jun 2020 Ankara, Turkey
Developing deep reinforcement learning models for agile drones. Design and manufacturing agile drones and its test bench.
 
 
 
 
 
Baykar Defence
Intern
Baykar Defence
Aug 2019 – Sep 2019 Istanbul, Turkey
Developing an augmented reality program to improve visual performance of pilots.
 
 
 
 
 
ASELSAN
Intern
ASELSAN
Jul 2019 – Jul 2019 Ankara, Turkey
Antenna azimuth position controller design and its implementation.
 
 
 
 
 
Yildiz Technical University
Intern
Yildiz Technical University
Jan 2019 – Jan 2019 Istanbul, Turkey
Design flapping wing aerial vehicle by mimicking birds and its fabrication.
 
 
 
 
 
Turkish Airlines Aviation Academy
Software Developer
Turkish Airlines Aviation Academy
Sep 2017 – Jun 2018 Istanbul, Turkey
  • Touch panel design, its wireless communications and improving an efficiency of electronic devices.
  • Mouse-touchscreen emulator device for wireless connection to smart boards.
 
 
 
 
 
Yildiz Technical University
Student Assistant
Yildiz Technical University
Jun 2017 – Jun 2020 Istanbul, Turkey
  • TUBITAK 1001 (Project no: 113E584): Micro robotic arm design, production, and contactless manipulation with visual feedback.
  • TUBITAK 1003 (Project no: 116E743): Measuring the refractive index of circulating tumor cells under electric field using digital holography.

Publications

Journals

  1. A. Yilmaz, M. I. Hayiroglu, Serkan Salturk, Levent Pay, A. A. Demircali, R. Varol, O. Tezen, S. Eren, T. Cetin, A. I. Tekkesin, and H. Uvet. Machine learning approach on high risk treadmill exercise test to predict obstructive coronary artery disease by using p, qrs, and t waves’ features. Accepted, Current Problems in Cardiology, 2022.

  2. R. Varol, Z. Karavelioglu, S. Omeroglu, G. Aydemir, A. Karadag, H. E. Meco, G. C. Kocal, A. Yilmaz, M. E. Oruc, G. B. Esmer, Y. Basbinar, and H. Uvet. Holographic cell stiffness mapping using acoustic stimulation. Accepted, Nature Communications, 2022.

  3. A. Yilmaz, Z. Karavelioglu, G. Aydemir, A. A. Demircali, R. Varol, A. Kosar, and H. Uvet. Microfluidic wound scratching platform based on an untethered microrobot with magnetic actuation. Sensors and Actuators B: Chemical, 2022.

  4. A. Yilmaz, F. Goktay, R. Varol, G. Gencoglan, and H. Uvet. Deep convolutional neural networks for onychomycosis detection using microscopic images with koh examination. Mycoses, 2022.

  5. A. Yilmaz, G. Gencoglan, R. Varol, A. A. Demircali, M. Keshavarz, and H. Uvet. Mobileskin: Classification of skin lesion images acquired using mobile phone-attached hand-held dermoscopes. Journal of clinical medicine, 2022.

  6. M. I. Ozmen, A. Yilmaz, C. Baykara, and O. A. Ozsoysal. Modelling fuel consumption and nox emission of a medium duty truck diesel engine with comparative time-series methods. IEEE Access, 2021.

  7. T. Abbasiasl, H. E. Sutova, S. Niazi, G. Celebi, Z. Karavelioglu, U. G. Kirabali, A. Yilmaz, H. Uvet, O. Kutlu, S. Ekici, M. Ghorbani, and A. Kosar. A flexible cystoscope based on hydrodynamic cavitation for tumor tissue ablation. IEEE Transactions on Biomedical Engineering, 2021.

Conference Proceedings

  1. A. Yilmaz, A. A. Demircali, B. Baban, S. Ozkasap, Y. Samoylenko, K. Chadha, and H. Uvet. Numerical Analysis of Micromixer Based on Microrobots. TIPTEKNO21, 2021.

  2. H. Demirci, A. Yilmaz, M. E. Oruc. Production of Thermal Imprint Apparatus for Micro, and Nano Molding. 5. GTU Graduate Research Symposium, 2021.

  3. R. Varol, S. Omeroglu, A. Yilmaz, M. E. Oruc, G. B. Esmer, and H. Uvet. Interferometric Measurement of Refractive Index Change of Tumor Cells Under Electrical Fields. In Digital Holography and Three-Dimensional Imaging, pages HTh4H–2. Optical Society of America, 2020.

  4. A. A. Demircali, T. Vatansever, E. Saruhan, A. Yilmaz, B. A. Yildiz, B. Guner, M. Kesen, K. Erkan, and H. Uvet. Increasing Longitudinal Forces of Microrobot Using with Diamagnetic Levitation. TOK2019, 2019.

  5. A. A. Demircali, T. Vatansever, E. Saruhan, A. Yilmaz, B. A. Yildiz, B. Guner, M. Kesen, K. Erkan, and H. Uvet. A Highly Accurate Microrobot Position Control in Liquid Laminar Flow. TOK2019, 2019.

  6. A. A. Demircali, T. Vatansever, E. Saruhan, A. Yilmaz, H. Gules, and H. Uvet. Increasing Longitudinal Forces of Microrobot Using with Diamagnetic Levitation. INSI2019, 2019.

  7. A. A. Demircali, T. Vatansever, E. Saruhan, A. Yilmaz, H. Gules, and H. Uvet. Motion Control of Micro-robot in Laminar Flow. INSI2019, 2019.

  8. A. A. Demircali, A. Yilmaz, H. Uvet. Microrobot Orientation Control with Laser, and Visual Feedback. pages 65–69. TORK2018, ISTANBUL, TURKEY, 2018. [Best Paper Award]

Preprints

  1. Bilici N., Ay F. C., Varol R., Yilmaz A., Kirabali U. G., A. Yilmaz, , H. Uvet. Study on the Concept, and Development of a Mobile Incubator. 2022.

  2. A. Yilmaz, A. Tekeci, M. E. Ozyetkin, A. A. Demircali, K. Unsal, and H. Uvet. The Effect of Pore Structure in Flapping Wings on Flight Performance. 2021.

  3. A. Yilmaz, M. Kalebasi, Y. Samoylenko, M. E. Guvenilir, and H. Uvet. Benchmarking of Lightweight Deep Learning Architectures for Skin Cancer Classification using ISIC 2017 Dataset. 2021.

  4. A. Yilmaz, A. A. Demircali, S. Ozkasap, L. Yorgancioglu, H. Uvet, and G. Aydemir. Mechatronic Investigation of Wound Healing Process by Using Micro Robot.2021.

  5. A. Yilmaz, D. Bayraktar, M. Akman, C. Sahinoglu, and H. Uvet. Gesture Classification using Machine Learning with Advanced Boosting Methods. 2021.

  6. A. Yilmaz, A. A. Demircali, S. Kocaman, H. Uvet. Comparison of Deep Learning, and Traditional Machine Learning Techniques for Classification of Pap Smear Images. 2020.

Patent and Review Service

  1. National Patent, An Electro-Holographic Microscopy System that can Separate Cells and Microorganisms According to the Refractive Index, (No:2020/19536), 12/2020.

  2. Ad hoc reviewer for International Journal of Imaging Systems and Technology, 2020.

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