I am a Research Assistant at Bundeswehr University Munich. I am working on computer vision and deep generative networks for single cell analysis.
I obtained my Master and Bachelor degree in Mechatronics Engineering from Yildiz Techinal University (YTU) under supervision of Prof. Huseyin Uvet. For 6 years, I am member of Advanced System and Innovation Laboratories in YTU as Student Assistant (2017-2020), Research Assistant (2020-2022) and now Engineering Manager (2022-now). Also, I was the Research Engineer at ASELSAN for 6 months in 2020.
Download my resumé .
MSc in Mechatronics Engineering, 2022
Yildiz Technical University
BSc in Mechatronics Engineering, 2020
Yildiz Technical University
Introduction- TET results and patients’ clinical symptoms influence cardiologists’ decision to perform Coronary Angiography (CAG) which is an invasive procedure. Since TET has high false positive rates, it can cause an unnecessary invasive CAG. Our primary objective was to develop a machine learning model capable of optimizing TET performance based on electrocardiography (ECG) waves characteristics and signals. Methods- TET reports from 294 patients who underwent CAG following high risk TET were collected and categorized into those with critical CAD and others. The signal was converted to time series format. A dataset containing the P, QRS, and T wave times and amplitudes was created. Using this dataset, five machine learning algorithms were trained with 5-fold cross validation. All these models were then compared to the performance of cardiologists on V5 signal. Results- The results from five machine learning models were clearly superior to the cardiologists’ V5 signal performance (p < 0.0001). In addition, the XGBoost model, with an accuracy of 80.92±6.42% and an area under the curve (AUC) of 0.78±0.06, was the most successful model. Conclusions- Machine learning models can produce high-performance diagnoses using the V5 signal markers only as it does not require any clinical markers obtained from TET reports. This can lead to significant contributions to improving clinical prediction in non-invasive methods
Microfluidic chips and a microrobot using SU-8 and NdFeB magnets were fabricated. A faster healing time can be achieved using our method than conventional scratching. Wound’s geometry and shape can influence healing speed and rate. Permanent magnets were successfully coated by PDA, and characterized by SEM and FT-IR. The cell viability is not adversely affected after microrobotic scratching.
160 microscopic full field photographs containing the fungal element, obtained from patients with onychomycosis, and 297 microscopic full field photographs containing dissolved keratin obtained from normal nails were collected. Smaller patches containing fungi (n = 1835) and keratin (n = 5238) were extracted from these full field images. In order to detect fungus and keratin, VGG16 and InceptionV3 models were developed by the use of these patches. The diagnostic performance of models was compared with 16 dermatologists by using 200 test patches.
A. Yilmaz, M. I. Hayiroglu, Serkan Salturk, Levent Pay, A. A. Demircali, R. Varol, O. Tezen, S. Eren, T. Cetin, A. I. Tekkesin, and H. Uvet. Machine learning approach on high risk treadmill exercise test to predict obstructive coronary artery disease by using p, qrs, and t waves’ features. Accepted, Current Problems in Cardiology, 2022.
R. Varol, Z. Karavelioglu, S. Omeroglu, G. Aydemir, A. Karadag, H. E. Meco, G. C. Kocal, A. Yilmaz, M. E. Oruc, G. B. Esmer, Y. Basbinar, and H. Uvet. Holographic cell stiffness mapping using acoustic stimulation. Accepted, Nature Communications, 2022.
H. Demirci, A. Yilmaz, M. E. Oruc. Production of Thermal Imprint Apparatus for Micro, and Nano Molding. 5. GTU Graduate Research Symposium, 2021.
A. A. Demircali, T. Vatansever, E. Saruhan, A. Yilmaz, B. A. Yildiz, B. Guner, M. Kesen, K. Erkan, and H. Uvet. Increasing Longitudinal Forces of Microrobot Using with Diamagnetic Levitation. TOK2019, 2019.
A. A. Demircali, T. Vatansever, E. Saruhan, A. Yilmaz, B. A. Yildiz, B. Guner, M. Kesen, K. Erkan, and H. Uvet. A Highly Accurate Microrobot Position Control in Liquid Laminar Flow. TOK2019, 2019.
A. A. Demircali, T. Vatansever, E. Saruhan, A. Yilmaz, H. Gules, and H. Uvet. Increasing Longitudinal Forces of Microrobot Using with Diamagnetic Levitation. INSI2019, 2019.
A. A. Demircali, T. Vatansever, E. Saruhan, A. Yilmaz, H. Gules, and H. Uvet. Motion Control of Micro-robot in Laminar Flow. INSI2019, 2019.
A. A. Demircali, A. Yilmaz, H. Uvet. Microrobot Orientation Control with Laser, and Visual Feedback. pages 65–69. TORK2018, ISTANBUL, TURKEY, 2018. [Best Paper Award]
National Patent, An Electro-Holographic Microscopy System that can Separate Cells and Microorganisms According to the Refractive Index, (No:2020/19536), 12/2020.
Ad hoc reviewer for International Journal of Imaging Systems and Technology, 2020.